Publications

Simon Rayner(?), Xuan Jiang(?), Minhua Luo (2020). Does SARS‐CoV‐2 has a longer incubation period than SARS and MERS?. Journal of medical virology, 92-5(476-478).

Xiangfu Zhong, Albert Pla, Simon Rayner (2020). Jasmine: a Java pipeline for isomiR characterization in miRNA-seq Data. Bioinformatics, 36-6(1933-1936).

Fatima Heinicke, Xiangfu Zhong, Manuela Zucknick, Johannes Breidenbach, Arvind YM Sundaram, Siri T. Flåm, Magnus Leithaug, Marianne Dalland, Andrew Farmer, Jordana M Henderson, Melanie A Hussong, Pamela Moll, Loan Nguyen, Amanda McNulty, Jonathan M Shaffer, Sabrina Shore, Hoichong Karen Yip, Jana Vitkovska, Simon Rayner, Benedicte A Lie, Gregor D Gilfillan (2020). Systematic assessment of commercially available low-input miRNA library preparation kits. RNA biology, 17-1(75-86).

Ann Lin, Frøydis Sved Skottvoll, Simon Rayner, Stig Pedersen‐Bjergaard, Gareth Sullivan, Stefan Krauss, Steven Ray Wilson, Sean Harrison (2020). 3D cell culture models and organ‐on‐a‐chip: Meet separation science and mass spectrometry. Electrophoresis, 41-1(56-64).

Xiangfu Zhong, Fatima Heinicke, Simon Rayner (2019). miRBaseMiner, a tool for investigating miRBase content. RNA biology 16-11(1534-1546).

Xiao-Yan Tao, Mu-Li Li, Qian Wang, Ciwang Baima, Mei Hong, Wei Li, Yong-Biao Wu, Yan-Rong Li, Yu-Min Zhao, Simon Rayner, Wu-Yang Zhu (2019). The reemergence of human rabies and emergence of an Indian subcontinent lineage in Tibet, China. PLoS Neglected Tropical Diseases, 13-1(e0007036).

Albert Pla, Xiangfu Zhong, Simon Rayner (2018). miRAW: A deep learning-based approach to predict microRNA targets by analyzing whole microRNA transcripts. PLoS computational biology(e1006185).

Kari Guderud, Line H Sunde, Siri T Flåm, Marthe T Mæhlen, Maria D Mjaavatten, Siri Lillegraven, Anna-Birgitte Aga, Ida M Evenrød, Ellen S Norli, Bettina K Andreassen, Sören Franzenburg, Andre Franke, Espen A Haavardsholm, Simon Rayner, Kristina Gervin, Benedicte A Lie (2017). Rheumatoid Arthritis Patients, Both Newly Diagnosed and Methotrexate Treated, Show More DNA Methylation Differences in CD4+ Memory Than in CD4+ Naïve T Cells. SFrontiers in immunology, 11(194).

Simon Rayner, Sören Bruhn, Helen Vallhov, Anna Andersson, R Blake Billmyre, Annika Scheynius (2017). Does SARS‐CoV‐2 has a longer incubation period than SARS and MERS?. Scientific reports, 7-1(1-9).

Fei Zhao, Zhang‐Zhou Shen, Zhong‐Yang Liu, Wen‐Bo Zeng, Shuang Cheng, Yan‐Ping Ma, Simon Rayner, Bo Yang, Guan‐Hua Qiao, Hai‐Fei Jiang, Shuang Gao, Hua Zhu, Fu‐Qiang Xu, Qiang Ruan, Min‐Hua Luo, Equal contribution (2016). Identification and BAC construction of Han, the first characterized HCMV clinical strain in China. Journal of medical virology, Volume88, Issue5(Pages 859-870).

Kai Xu, Zhiming Yuan(?), Simon Rayner(?), Xiaomin Hu(?) (2015). Genome comparison provides molecular insights into the phylogeny of the reassigned new genus Lysinibacillus. BMC genomics, 16 (1)(140).

Feifei Yin, Zeguang Wu, Wei Fang, Chunchen Wu, Simon Rayner, Meifang Han, Fei Deng, Ruikun Du, Jinliang Liu, Manli Wang, Hualin Wang, Qin Ning, Zhihong Hu (2015). Resistant mutations and quasispecies complexity of hepatitis B virus during telbivudine treatment". Journal of General Virology Volume 96, Issue 11.

Xiao-Yan Tao, Zhen-Yang Guo, Hao Li, Wen-Tao Jiao, Xin-Xin Shen, Wu-Yang Zhu, Simon Rayner, Qing Tang, Equal contribution (2015). Rabies cases in the west of China have two distinct origins. PLoS Negl Trop Dis, 9-10(e0004140).

Yanbo Ye, Bo Wei, Lei Wen, Simon Rayner (2015). BlastGraph: a comparative genomics tool based on BLAST and graph algorithms. Bioinformatics, Volume 29, Issue 24Pages 3222–3224.

Si-Qing Liu, Cheng-Lin Deng, Zhi-Ming Yuan, Simon Rayner, Bo Zhang (2015). Identifying the pattern of molecular evolution for Zaire ebolavirus in the 2014 outbreak in West Africa. Infection, Genetics and Evolution, 92-5(476-478).

Ya-Ru Fu, Xi-Juan Liu, Xiao-Jun Li, Zhang-zhou Shen, Bo Yang, Cong-Cong Wu, Jia-Fu Li, Ling-Feng Miao, Han-Qing Ye, Guan-Hua Qiao, Simon Rayner, Stéphane Chavanas, Christian Davrinche, William J Britt, Qiyi Tang, Michael McVoy, Edward Mocarski, Min-Hua Luo (2015). MicroRNA miR-21 attenuates human cytomegalovirus replication in neural cells by targeting Cdc25a. *Journal of Virology, 89 (2)*1102.

Miao Song, Qing Tang, Simon Rayner, Xiao-Yan Tao, Hao Li, Zhen-Yang Guo, Xin-Xin Shen, Wen-Tao Jiao, Wei Fang, Jun Wang, Guo-Dong Liang (2014). Does SARS‐CoV‐2 has a longer incubation period than SARS and MERS?. BMC infectious diseases, 14-1(212).

Na Han, James Adams, Ping Chen, Zhen-yang Guo, Xiang-fu Zhong, Wei Fang, Na Li, Lei Wen, Xiao-yan Tao, Zhi-ming Yuan, Simon Rayner (2014). Comparison of genotypes I and III in Japanese encephalitis virus reveals distinct differences in their genetic and host diversity. Journal ofVirology, 88-19(11469-11479).

Lida Zhu, Juan Liu, Fengji Liang, Simon Rayner, Jianghui Xiong (2014). Predicting response to preoperative chemotherapy agents by identifying drug action on modeled microRNA regulation networks. PloS one, 9-5(e98140).

Zhaorui Zhou, Fei Deng, Na Han, Hualin Wang, Surong Sun, Yujiang Zhang, Zhihong Hu, Simon Rayner (2013). Reassortment and migration analysis of Crimean–Congo haemorrhagic fever virus. Journal of General Virology, 92-5(476-478).

Xiao-Yan Tao, Qing Tang, Simon Rayner, Zhen-Yang Guo, Hao Li, Shu-Lin Lang, Cui-Ping Yin, Na Han, Wei Fang, James Adams, Miao Song, Guo-Dong Liang (2013). Molecular phylodynamic analysis indicates lineage displacement occurred in Chinese rabies epidemics between 1949 to 2010. PLoS Negl Trop Dis 7-7(e2294).

Ping Chen, Yun Gan, Na Han, Wei Fang, Jiafu Li, Fei Zhao, Kanghong Hu, Simon Rayner (2013). Computational evolutionary analysis of the overlapped surface (S) and polymerase (P) region in hepatitis B virus indicates the spacer domain in P is crucial for survival. PLoS One, 92-5(476-478).

Lin Li, Na Han, Junfeng Lu, Tianyi Li, Xiangfu Zhong, Hao Wu, Simon Rayner, Lili Chen, Yongjian Liu, Xiaolin Wang, Hanping Li, Jingyun Li (2013). Genetic characterization and transmitted drug resistance of the HIV type 1 epidemic in men who have sex with men in Beijing, China. AIDS research and human retroviruses29-3(633-637).

Zhenyang Guo, Xiaoyan Tao, Cuiping Yin, Na Han, Jinning Yu, Hao Li, Haizhou Liu, Wei Fang, James Adams, Jun Wang, Guodong Liang, Qing Tang, Simon Rayner (2013). National borders effectively halt the spread of rabies: the current rabies epidemic in China is dislocated from cases in neighboring countries. PLoS Negl Trop Dis, 7-1(e2039).

Dianhai Hou, Leike Zhang, Fei Deng, Wei Fang, Ranran Wang, Xijia Liu, Lin Guo, Simon Rayner, Xinwen Chen, Hualin Wang, Zhihong Hu (2013). Comparative proteomics reveal fundamental structural and functional differences between the two progeny phenotypes of a baculovirus. Journal of Virology, 87-2(829-839).

James T Adams, Deric J Gray, Simon Rayner (2012). Observation of non-principal plane neutral points in the upwelling polarized light field above a water surface. Applied optics, 51-22(5387-5391).

Jinning Yu, Hao Li, Qing Tang, Simon Rayner, Na Han, Zhenyang Guo, Haizhou Liu, James Adams, Wei Fang, Xiaoyan Tao, Shumei Wang, Guodong Liang (2012). The spatial and temporal dynamics of rabies in China. PLoS Negl Trop Dis, 6-5(e1640).

Yonggan Wu, Bo Wei, Haizhou Liu, Tianxian Li, Simon Rayner (2011). MiRPara: a SVM-based software tool for prediction of most probable microRNA coding regions in genome scale sequences. BMC bioinformatics, 12-1(1-14).

Xiao-Ling Pan, Hong Liu, Huan-Yu Wang, Shi-Hong Fu, Hai-Zhou Liu, Hai-Lin Zhang, Ming-Hua Li, Xiao-Yan Gao, Jing-Lin Wang, Xiao-Hong Sun, Xin-Jun Lu, You-Gang Zhai, Wei-Shan Meng, Ying He, Huan-Qin Wang, Na Han, Bo Wei, Yong-Gan Wu, Yun Feng, Du-Juan Yang, Li-Hua Wang, Qin Tang, Guoliang Xia, Ichiro Kurane, Simon Rayner, Guo-Dong Liang (2011). Emergence of genotype I of Japanese encephalitis virus as the dominant genotype in Asia. Journal of Virology, 85-19(9847-9853).